diff --git a/tools/doc/doxygen.cfg b/tools/doc/doxygen.cfg
index 6328b0dc..79d7a1e3 100644
--- a/tools/doc/doxygen.cfg
+++ b/tools/doc/doxygen.cfg
@@ -5,7 +5,7 @@
 #---------------------------------------------------------------------------
 PROJECT_NAME           = "Magic Set Editor"
 PROJECT_NUMBER         = 
-OUTPUT_DIRECTORY       = ../../doc
+OUTPUT_DIRECTORY       = ../../doc/doxygen
 CREATE_SUBDIRS         = NO
 OUTPUT_LANGUAGE        = English
 USE_WINDOWS_ENCODING   = YES
diff --git a/tools/doc/fix.pl b/tools/doc/fix.pl
index 920cf054..35cbefef 100644
--- a/tools/doc/fix.pl
+++ b/tools/doc/fix.pl
@@ -1,6 +1,6 @@
 #! /usr/bin/perl
 
-@html = <../../doc/*.html>;
+@html = <../../doc/doxygen/*.html>;
 
 # for each html file
 foreach $file (@html) {